SCID 303 Bioinformatics

Room Pr612 @Phayathai Campus

Department of Microbiology, Faculty of Science, Mahidol University


Course Syllabus 2019

Color Codes

Lecture
Group Discussion
Examination

Dates Times Titles Instructors
17 January 2019
Thursday
13:00-14:00 Lecture 1: Big Picture of Bioinformatics [pdf] Pravech
14:00-15:00 Lecture 2: Traditional Sequencing of Genes and Genomes [pdf] Pravech
15:00-16:00 Lecture 3: Next-generation Sequencing (lecturesNGS) Technologies [pdf] [pyrosequencing] [illumina] [SOLiD] [Ion Torrent] [PacBio] [Oxford Nanopore] Pravech
24 January 2019
Thursday
13:00-14:00 Lecture 4: Biodatabases [pdf] Pravech
14:00-15:00 Lecture 5-6: Pairwise Sequence Alignment [pdf] Pravech
15:00-16:00
31 January 2019
Thursday
13:00-14:00 Lecture 7: BLAST [pdf] Pravech
14:00-15:00 Lecture 8: Multiple Sequence Alignment [pdf] Pravech
7 February 2019
Thursday
13:00-14:00 Group Discussion 1: Sequence Alignment Pravech
14:00-15:00
14 February 2019
Thursday
13:00-14:00 Lecture 9: Molecular Phylogenetics I [pdf] Pakorn
14:00-15:00 Lecture 10: Molecular Phylogenetics II [pdf] Pakorn
21 February 2019
Thursday
13:00-14:00 Lecture 11: Molecular Phylogenetics III [pdf] Pakorn
14:00-15:00 Lecture 12: Molecular Phylogenetics IV s[pdf] Pakorn
28 February 2019
Thursday
13:00-14:00 Group Discussion 2: Applications of the Trees Pakorn
14:00-15:00
7 March 2019
Thursday
13:00-14:00 Midterm Examination Pravech
14:00-15:00
15:00-16:00
14 March 2019
Thursday
13:00-14:00 Lecture 13: Systems Biology I Treenut
14:00-15:00 Lecture 14: Systems Biology
21 March 2019
Thursday
13:00-14:00 Lecture 15: Genomics I Saowalak
14:00-15:00 Lecture 16: Genomics II
28 March 2019
Thursday
13:00-14:00 Group Discussion 3: What genomes tell us? Saowalak
14:00-15:00
4 April 2019
Thursday
13:00-14:00 Lecture 17: Proteomics I Onrapak
14:00-15:00 Lecture 18: Proteomics II Onrapak
15:00-16:00 Lecture 19: Proteomics III Onrapak
11 April 2019
Thursday
13:00-14:00 Group Discussion 4: Applications of Protein Expression Onrapak
14:00-15:00
18 April 2019
Thursday
13:00-14:00 Lecture 20: Metabolomics I Sakda
14:00-15:00 Lecture 21: Metabolomics II Sakda
15:00-16:00 Lecture 22: Metabolomics III Sakda
25 April 2019
Thursday
13:00-14:00 Group Discussion 5: Significance of Metabolomics Sakda
14:00-15:00
2 May 2019
Thursday
13:00-14:00 Lecture 23: Transcriptomics I Varodom
14:00-15:00 Lecture 24: Transcriptomics II Varodom
15:00-16:00 Lecture 25: Transcriptomics III Varodom
9 May 2019
Thursday
13:00-14:00 Group Discussion 6: Information from the Gene Expression Varodom
14:00-15:00
16 May 2019
Thursday
13:00-14:00 Final Examination Pravech
14:00-15:00
15:00-16:00

List of Instructors

No. Names Affiliations
1. Dr. Pravech Ajawatanawong Department of Microbiology, Faculty of Science, Mahidol University — Course Coordinator —
2. Dr. Pakorn Aiewsakun Department of Microbiology, Faculty of Science, Mahidol University
3. Asst. Prof. Varodom Charoensawan Department of Biochemistry, Faculty of Science, Mahidol University
4. Asst. Prof. Onrapak Reamtong Department of Molecular Biology, Faculty of Tropical Medicine, Mahidol University
5. Dr. Sakda Khoomrung Department of Biochemistry, Faculty of Medicine Siriraj Hospital, Mahidol University
6. Asst. Prof. Treenut Saithong King Mongkut University of Technology Thonburi (KMUTT)
6. Asst. Prof. Saowalak Kalapanulak King Mongkut University of Technology Thonburi (KMUTT)